Microplastic aging alters the adsorption-desorption behaviors of sulfamethoxazole in marine animals: A study in simulated biological liquids.

Antibiotics and microplastics (MPs) coexisting as unique environmental contaminants may cause unintended environmental issues. In this study, the adsorption-desorption behaviors of sulfamethoxazole (SMX) on both original and UV-aged MPs were examined. Polyhydroxyalkanoates (PHA) and polyethylene (PE), which represent degradable and refractory MPs, respectively, were chosen as two distinct types of MPs. Furthermore, simulated fish intestinal fluids (SFIF) and simulated mammalian stomach fluids (SMGF) were employed to evaluate the desorption behaviors of SMX from aged MPs. Our findings demonstrate that UV-aging altered the polarity, hydrophilicity, and structure of the MPs. Aged MPs showed a higher adsorption capacity than the original MPs and they have a higher desorption capacity than original MPs in simulated body fluids. PE has a higher SMX desorption capacity in SFIF and the opposite happened in SMGF. Our results highlight the importance of considering the different adsorption-desorption behaviors of antibiotics on MPs when evaluating their environmental impact.

Graphene-Based Membranes for Water Desalination: A Literature Review and Content Analysis.

Graphene-based membranes have unique nanochannels and can offer advantageous properties for the water desalination process. Although tremendous efforts have been devoted to heightening membrane performance and broadening their application, there is still lack of a systematic literature review on the development and future directions of graphene-based membranes for desalination. In this mini-review, literature published between 2011 and 2022 were analyzed by using the bibliometric method. We found that the major contributors to these publications and the highest citations were from China and the USA. Nearly 80% of author keywords in this analysis were used less than twice, showing the broad interest and great dispersion in this field. The recent advances, remaining gaps, and strategies for future research, were discussed. The development of new multifunctional nanocomposite materials, heat-driven/solar-driven seawater desalination, and large-scale industrial applications, will be important research directions in the future. This literature analysis summarized the recent development of the graphene-based membranes for desalination application, and will be useful for researchers in gaining new insights into this field.

PSR-FCCLP model based total maximum allocated loads optimization of TN and TP in Bohai Bay.

Eutrophication is a global problem for coastal ecosystems, one that Bohai Bay, China, has been severely afflicted due to rapid economic and social development in the past decades. It was urgent to manage the total maximum allocated loads (TMALs) of the total nitrogen (TN) and total phosphorus (TP) on land-based, which was closely related to coastal eutrophication. In this study, from the perspective of economy-resources-environment (ERE) system, we presented the fuzzy credibility constrained linear programming based on pressure-state-response (PSR-FCCLP) model, which calculated the TMALs of TN and TP at three credibility levels (λ = 0.55, 0.75, and 0.95) in Bohai Bay. The results showed that when the credibility level increased from 0.55 to 0.95, the TMALs of TN and TP would decrease from 13,573.38 t/a to 12,820.00 t/a and from 2665.58 t/a to 2514.90 t/a, respectively. This study will provide support for environmental management in coastal regions.

Biodiversity assessment in the near-shore waters of Tianjin city, China based on the Pressure-State-Response (PSR) method.

Parameters regarding water quality, biology, marine disasters, and anthropogenic factors were collected and analyzed from 2020 to 2021 to evaluate the marine biodiversity of Tianjin's near-shore sea area accurately. A total of 29 indicators obtained from the surveys were selected to form the biodiversity evaluation system. The Pressure-State-Response (PSR) framework model combined with the ecological environment characteristics was used as the assessment method. The analytic hierarchy process (AHP) determined the weights of each indicator. The results showed that the main influencing factors of the water environment for species diversity monitoring were dissolved inorganic nitrogen (DIN) and chemical oxygen demand (COD), and all water quality monitoring items were relatively stable without obvious pollution. The biomass of biological species in the near-shore sea area of Tianjin was relatively low, the species distribution was uneven, and the structure and function of the ecosystem need to be improved since environmental problems still existed.

Polyethylene terephthalate and di-(2-ethylhexyl) phthalate in surface and core sediments of Bohai Bay, China: Occurrence and ecological risk.

Bohai Bay, a typical semi-enclosed bay, is close to the Beijing-Tianjin-Hebei Region, the economic center of north China. The release of emerging contaminants was considerably increasing with the fast urbanization and industrialization along the coastline. However, such data, e.g. plastic polymers, are still limited. Here, polyethylene terephthalate (PET) and di-(2-ethylhexyl) phthalate (DEHP) in surface sediments and sediment cores from the coastal area of Bohai Bay were investigated. The ranges of PET and DEHP concentrations in surface sediments are 1.49-13.90 mg/kg and 0.23-19.26 mg/kg, respectively. The relatively high contents of PET and DEHP were found near the Haihe River estuary, indicating the importance of riverine input. The PET and DEHP profiles in the cores dated by the 210Pb method showed increasing trends with time. The PET in Bohai Bay was low risk evaluated by the potential ecological risk assessment. Low ecological risks of DEHP to the benthic organisms were found in the sediments, using the environmental risk limits, risk quotient, threshold effect level and probable effect level methods. The pollution levels of PET and DEHP in Bohai Bay obtained in this study may provide important data for making pollution control strategies.

Influence of Microplastics on the Growth and the Intestinal Microbiota Composition of Brine Shrimp.

Microplastics (MPs) are ubiquitous in the aquatic environment and can be frequently ingested by zooplankton, leading to various effects. Brine shrimp (Artemia parthenogenetica) has an important role in the energy flow through trophic levels in different seawater systems. In this work, the influence of polyethylene (PE) and polystyrene (PS) MPs on the growth of brine shrimp and corresponding changes of gut microbiota were investigated. Our results showed that the MPs remarkably reduced the growth rate of brine shrimp, and the two types of MPs have different impacts. The average body length of brine shrimps was reduced by 17.92 and 14.95% in the PE group and PS group, respectively. MPs are mainly found in the intestine, and their exposure evidently affects the gut microbiota. By using 16S rRNA gene high-throughput sequencing, 32 phyla of bacteria were detected in the intestine, and the microbiome consisted mainly of Proteobacteria, Firmicutes, and Actinobacteria. MPs' exposure significantly increased the gut microbial diversity. For the PE group, the proportion of Actinobacteria and Bacteroidetes increased by 45.26 and 2.73%, respectively. For the PS group, it was 54.95 and 1.27%, respectively. According to the analysis on genus level, the proportions of Ponticoccus, Seohaeicola, Polycyclovorans, and Methylophaga decreased by 46.38, 1.24, 1.07, and 2.66%, respectively, for the PE group and 57.87, 1.43, 0.88, and 2.24%, respectively, for the PS group. In contrast, the proportions of Stappia, Microbacterium, and Dietzia increased by 1.12, 23.27, and 11.59%, respectively, for the PE group, and 1.09, 3.79, and 42.96%, respectively, for the PS group. These experimental results demonstrated that the ingestion of MPs by brine shrimp can alter the composition of the gut microbiota and lead to a slow growth rate. This study provides preliminary data support for understanding the biotoxicity of MPs to invertebrate zooplankton and is conducive to the further risk assessment of MP exposure.

Regime shifts in trophic status and regional nutrient criteria for the Bohai Bay, China.

Identifying trophic status shift and developing nutrient criteria were considered important for controlling coastal eutrophication. Based on data from 1980 to 2018, we used sequential t-test analysis of regime shifts and assessment of coastal trophic status models to detect regime shifts in trophic status in Bohai Bay (China). We identified four distinct periods: unimpaired (1980-1984), minimally impacted (1985-1994), tipping point (1995-1999) and severely degraded (2000-2018). Using the reference conditions at different trophic status, a frequency distribution analysis was performed to develop candidate nutrient criteria. By considering other factors, such as the quantity and quality of data and long-term nutrient variations, we determined recommended criteria for dissolved inorganic nitrogen (15.3 µmol L-1) and phosphorus (0.42 µmol L-1) in Bohai Bay. This study provides a novel and feasible approach to determine reference conditions for the determination of nutrient criteria for coastal waters.

Expression of mammalian ASH1 and ASH4 in Drosophila reveals opposing functional roles in neurogenesis.

To investigate whether the members of the mammalian Achaete-Scute Complex homologue (ASH) gene family have evolved functional differences, we used the patterning of bristles as a phenotypic marker. Drosophila uses a single genetic locus - the Achaete-Scute Complex - to demarcate the regions of the body where bristles can form. We found 4-5 Achaete-Scute Complex homologue genes (ASH) in the mammalian genome, which are homologous with scute in Drosophila. Although ASH2 and ASH3 have gained new functions during evolution, the function of ASH4 and its evolutionary changes are still unclear. In this study, we overexpressed mouse and human ASH1 and ASH4 in the Drosophila notum respectively. The results show that both the protein sequence and cis-regulatory elements of mammalian ASH1 have conserved an ancient proneural function during evolution. However, mouse ASH4 has lost proneural function partly due to truncation of a C-terminal amino acid domain. Interestingly, instead of a similar loss of proneural function, we found human ASH4 can actually inhibit Drosophila bristle development, implying that human ASH4 may be a potential factor relating to skin development in human being. Our results demonstrate gene duplication of the ASH family may have led to a novel function during evolution.

Gene expression patterns determine the differential numbers of dorsocentral macrochaetes between Musca domestica and Drosophila melanogaster.

The evolutionary differences in sensory bristle patterns on the thorax of dipterans are an excellent model for studying the patterns of evolutionary development. We observed that Drosophila melanogaster has two pairs of the large bristles, called macrochaetes, in the dorsocentral (DC) region of the notum, while Musca domestica retains six DC macrochaetes. To explore possible mechanism by which these two dipteran species have different numbers of DC bristles, we compared the corresponding protein sequences, the gene expression levels and the spatial expression patterns of five genes (scute, pnr, ush, hairy, and emc) for bristle development between two species. We also checked the overexpression of scute and emc in transgenic flies. The results demonstrated a strong conservation of five protein sequences between these two species. The mRNA expression of the five genes differed significantly between D. melanogaster and M. domestica. The gene expression patterns exhibited a species-specific pattern during the larval development stage. It suggests that the function of these genes has been conserved in regulating the development of macrocheates between housefly and fruit fly, whereas the gene expression levels, especially spatial expression patterns lead to species-specificity in DC bristles.

DNA methylation is not involved in dietary restriction induced lifespan extension in adult Drosophila.

Dietary restriction (DR) is widely regarded as a viable intervention to extend lifespan and healthspan in diverse organisms. The precise molecular regulatory mechanisms are largely unknown. Epigenetic modifications are not stable upon DR and also keep changing with age. Here, we employed whole genome bisulfite sequencing to determine the DNA methylation changes upon DR in adult Drosophila. Our results indicate that although a low level of DNA methylation exists in the adult Drosophila genome, there is no significant difference in DNA methylation levels upon DR when compared to unrestricted flies. This suggests that other epigenetic components such as histone modifications might be altered by DR.

Molecular evolutionary patterns of NAD+/Sirtuin aging signaling pathway across taxa.

A deeper understanding of the conserved molecular mechanisms in different taxa have been made possible only because of the evolutionary conservation of crucial signaling pathways. In the present study, we explored the molecular evolutionary pattern of selection signatures in 51 species for 10 genes which are important components of NAD+/Sirtuin pathway and have already been directly linked to lifespan extension in worms and mice. Selection pressure analysis using PAML program revealed that MRPS5 and PPARGC1A were under significant constraints because of their functional significance. FOXO3a also displayed strong purifying selection. All three sirtuins, which were SIRT1, SIRT2 and SIRT6, displayed a great degree of conservation between taxa, which is consistent with the previous report. A significant evolutionary constraint is seen on the anti-oxidant gene, SOD3. As expected, TP53 gene was under significant selection pressure in mammals, owing to its major role in tumor progression. Poly-ADP-ribose polymerase (PARP) genes displayed the most sites under positive selection. Further 3D structural analysis of PARP1 and PARP2 protein revealed that some of these positively selected sites caused a change in the electrostatic potential of the protein structure, which may allow a change in its interaction with other proteins and molecules ultimately leading to difference in the function. Although the functional significance of the positively selected sites could not be established in the variants databases, yet it will be interesting to see if these sites actually affect the function of PARP1 and PARP2.

LncRNA mediated regulation of aging pathways in Drosophila melanogaster during dietary restriction.

Dietary restriction (DR) extends lifespan in many species which is a well-known phenomenon. Long non-coding RNAs (lncRNAs) play an important role in regulation of cell senescence and important age-related signaling pathways. Here, we profiled the lncRNA and mRNA transcriptome of fruit flies at 7 day and 42 day during DR and fully-fed conditions, respectively. In general, 102 differentially expressed lncRNAs and 1406 differentially expressed coding genes were identified. Most informatively we found a large number of differentially expressed lncRNAs and their targets enriched in GO and KEGG analysis. We discovered some new aging related signaling pathways during DR, such as hippo signaling pathway-fly, phototransduction-fly and protein processing in endoplasmic reticulum etc. Novel lncRNAs XLOC_092363 and XLOC_166557 are found to be located in 10 kb upstream sequences of hairy and ems promoters, respectively. Furthermore, tissue specificity of some novel lncRNAs had been analyzed at 7 day of DR in fly head, gut and fat body. Also the silencing of lncRNA XLOC_076307 resulted in altered expression level of its targets including Gadd45 (involved in FoxO signaling pathway). Together, the results implicated many lncRNAs closely associated with dietary restriction, which could provide a resource for lncRNA in aging and age-related disease field.

The complete nucleotide sequence of the mitochondrial genome of Drosophila formosana (Diptera: Drosophilidae).

Drosophila formosana (Diptera: Drosophilidae) belongs to the Drosophilidae group of Drosophila. The mitochondrial genome sequence of Drosophila formosana is determined in this study. Mitochondrion of D. formosana is a circular DNA molecule of the 16 100 nucleotide pairs (bp) that contains one encoding region including 37 genes and 1 non-coding A + T-rich region. The similarity and typicality have been showed by the structure and organization analysis. All genes are arranged in the circular DNA molecule. In addition to DN5 that use GTG start codon, all other protein-coding genes (PCGs) start with an ATN start codon. Ten protein-coding genes stop with the termination codon TAN, while other protein-coding genes (PCGs) used incomplete termination codon TA- (cox2, nad5, nad1). The A + T-rich region with a length of 1088 bp is located between rrnS and trnI. The mitochondrial genome of D. formosana has been completely sequenced for the first time in this study.

Molecular Evolutionary Analysis of ß-Defensin Peptides in Vertebrates.

Vertebrate ß-defensins comprise an important family of antimicrobial peptides that protect organisms from a diverse spectrum of bacteria, viruses, fungi, and protozoan parasites. Previous studies have shown a marked variation in the number of ß-defensins among species, but the underlying reason is unclear. To address this question, we performed comprehensive computational searches to study the intact ß-defensin genes from 29 vertebrates. Phylogenetic analysis of the ß-defensin genes in vertebrates identified frequent changes in the number of ß-defensin genes and multiple species-specific gene gains and losses that have been occurring throughout the evolution of vertebrates. The number of intact ß-defensin genes varied from 1 in the western clawed frog to 20 in cattle, with numerous expansions and contractions of the gene family throughout vertebrates, especially among tetrapods. The ß-defensin gene number in a species is relevant to the ever-changing microbial challenges from the environment that they inhabit. Selection pressure analysis shows there exist three amino acid sites under significant positive selection. Protein structural characteristics analysis suggests that structural diversity determines the diverse functions of ß-defensins. Our study provides a new perspective on the relationships among vertebrate ß-defensin gene repertoires and different survival circumstances, which helps explain how ß-defensins have evolved.

[Role of genes and their cis-regulatory elements during animal morphological evolution].

Cis-regulatory hypothesis is one of the most important theories in evolutionary developmental biology (evo-devo), which claims that evolution of cis-regulatory elements (CREs) plays a key role during evolution of morphology. However, an increasing number of experimental results show that cis-regulatory hypothesis alone is not far enough to explain the complexity of evo-devo processes. Other modifications, including mutations of protein coding, gene and genome duplications, and flexibility of homeodomains and CREs, also cause the morphological changes in animals. In this review, we retrospect the recent results of evolution of CREs and genes associated with CREs and discuss new methods and trends for research in evo-devo.

[Determination of arsenic species in bunge pricklyash seed by HG-AFS].

Some of traditional Chinese medicine (TCM) contain arsenide, such as realgar. The total amount of arsenic in the TCM exceeds the limits according to related regulations. But the roles of arsenic in TCM or its side-effects depend on its species existing in those therapies, not on the total amount of arsenic. Therefore, in recent years, the analysis of arsenic in TCM focuses on the species of arsenic. The present paper combines the method of extracting chemical composition from bunge pricklyash seed and analyzing the contents and the speciation of arsenic of bunge pricklyash seed (BPS) in different habitat by atomic fluorescence spectrometry (AFS-3100). By using 0.45 microm filter membrane and mixed solvent, two different species of the decoction of BPS were extracted, named the suspended and the soluble, and by using ion-exchange resin, the soluble arsenic could be separated as As(III), As(V), MMA and DMA. The authors established the segregation analysis methods for those species. The results shows that BPS in different habitat all contain arsenic, mostly as the species of inorganic arsenic, and the contents of As(V) are higher than As(III). The lixiviating rate of arsenic is highest with the solvent of methanol-water (4/1), reaching 53.7%-62.3%. The recovery of the method was 96.0%-101.3% and the relative standard deviation was less than 2.66%. The results show that the sensitivity and reproducibility of this method were excellent, and provided theoretical basis for further development of BPS

[Speciation analysis of zinc in bunge pricklyash seed by AAS].

A method was developed for the investigation of the contents and the speciation of zinc in bunge pricklyash seed (BPS) in different habitats by atomic absorption spectrum (AAS). By using 0.45 microm filter membrane and chloroform, four different species of the decoction of BPS, named the suspended, the soluble, the inorganic and organic species, were obtained, and the segregation analysis methods for those species were developed. The octanol-water system was proposed to simulate the distribution of decocted zinc in the stomach and the intestine of the human body. The results showed that the decocted zinc was the main content of the total zinc, and the contents of zinc were different in different habitats, but the percentages of decocted zinc and the organism zinc were similar. The recovery for the method was 97.5%-104.0% and the relative standard deviation was less than 2.36%. The results showed that the sensitivity and reproducibility of this method were excellent.